THESIS
2019
xiii, 65 pages : illustrations (chiefly color) ; 30 cm
Abstract
Osteoporosis is the most prevalent metabolic bone disease, which is mainly characterized by
vertebral fracture. Most of the clinical diagnosis were done manually with reports of under-diagnosis
due to heavy workload. Therefore, there is a need for an automatic and objective
shape measurement of vertebrae. In this study, we have used 120 thoracic and 120 lumbar
vertebral X-ray images, with professional edge annotation provided by medical doctors,
where the training to validating ratio was 2:1. We proposed and implemented a novel
framework, Automatic Instance-edge Detection Network (AID-Net) to perform instance edge
detection of vertebral bodies on X-ray images by deep learning algorithms. Mask R-CNN was
adopted as the basis of our framework, learnt from instance edge labelled by...[
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Osteoporosis is the most prevalent metabolic bone disease, which is mainly characterized by
vertebral fracture. Most of the clinical diagnosis were done manually with reports of under-diagnosis
due to heavy workload. Therefore, there is a need for an automatic and objective
shape measurement of vertebrae. In this study, we have used 120 thoracic and 120 lumbar
vertebral X-ray images, with professional edge annotation provided by medical doctors,
where the training to validating ratio was 2:1. We proposed and implemented a novel
framework, Automatic Instance-edge Detection Network (AID-Net) to perform instance edge
detection of vertebral bodies on X-ray images by deep learning algorithms. Mask R-CNN was
adopted as the basis of our framework, learnt from instance edge labelled by medical experts.
Since X-ray image formed by only one projection plane of penetration, superior and inferior
end plate of vertebral bodies will be ‘bubble’ shape instead of single line. Therefore, differ
from typical regional-of-interest based segmentation task, we aimed to find the accurate
edges locations of the vertebral bodies. Therefore, Holistically-nested Edge Detection, state-of-the-art of supervised edge detection, was employed rather than other simple
segmentation network. The accuracy of the edge detection is evaluated with dice coefficient
and Hausdorff distance. The dice coefficient of our framework on each edge of vertebral body
is more than 0.7, and around 10% Hausdorff distance relative to the vertebral bounding box.
Also, our framework performs vertebral edge detection fully automatically, without any
human interaction is needed. Our proposed algorithm is the first instance edge detection
method of vertebrae on X-ray images, which achieved automatic and objective measurement.
With this fully automatic approach, this method can easily be by adopted by existing vertebral
disease diagnosis systems.
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